Visium with CytAssist

10X Genomics Spatial Gene Expression samples are now being processed on the Visium CytAssist located at the Gene Expression Center. TRIP will be assisting with the first steps of the Visium with CytAssist protocol: Histology, RNA extraction from FFPE blocks used for QC, helping to find a pathologist for ROI selection (if needed) and Visium H&E image scanning.

For Visium questions and to schedule a meeting to discuss your project and timeline, contact Gene Expression Center at: gecinfo@biotech.wisc.edu

After your meeting with GEC, please submit a TRIP iLab request.

For the TRIP portion of your  budget estimate email: trip@pathology.wisc.edu 

For information on TRIP’s portion of the Visium with CytAssist collaboration with GEC.

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FAQ +

Information to provide TRIP for a Visium CytAssist project

 

Click here for detailed information.

Sample Size

Each slide being run on the CytAssist will have one tissue sample centered on the slide. Based on the size of the tissue, one of two gaskets will be used. A 6.5mm x 6.5mm gasket or an 11mm x 11mm gasket.