TRIP Publications

  1. Zheng, C.; Allen, K.O.; Liu, T.; Solodin, N.M.; Meyer, M.B.; Salem, K.; Tsourkas, P.K.; McIlwain, S.J.; Vera, J.M.; Cromwell, E.R.; et al. Elevated GRHL2 Imparts Plasticity in ER-Positive Breast Cancer Cells. Cancers 2024, 16, 2906. Aug 21, 2024.
  2. Albertini,M.R.; Zuleger,C.L.; Ranheim, E.A.; Shiyanbola, O.; Sondel, P.M.; Morris, Z.S.; Eickhoff, J.; Newton, M.; Ong, I.M.; Schwartz, R.W.; Hayim, R.; Kurzman, I.D.; Michelle, T.; Vail, D.M. Administration of intratumoral GD2-directed interleukin-2immunocytokine and local radiation therapy to activate rejection of spontaneous canine melanoma. Melanoma Research 2024 Aug 1;34(4):307-318. PMID: 38768442.  link: https://journals.lww.com/melanomaresearch/abstract/2024/08000/administration_of_intratumoral_gd2_directed.3.aspx
  3. Lozar, T,; Laklouk, I.; Golfinos, A.E.; Gavrielatou, N., Xu, J.; et al. Stress Keratin 17 Is a Predictive Biomarker Inversely Associated with Response to Immune Check-Point Blockade in Head and Neck Squamous Cell Carcinomas and Beyond. Cancers. 2023, Oct, 9. https://doi.org/10.3390/cancers15194905
  4. Lechner, S.A.; Welsch, J.M.; Pahapill, N.K.; Kaldenberg, T.A.R.; Regenbaum, A.; Kelm-Nelson, C.A. Predictors of prodromal Parkinson’s disease in young adult Pink1-/- rats. Behav. Neurosci. 11 Sept 2022. Vol 16-2022. https://doi.org/10.3389/fnbeh.2022.867958
  5. Papadas A, Deb G, Cicala A, Officer A, Hope C, Pagenkopf A, Flietner E, Morrow ZT, Emmerich P, Wiesner J, Arauz G, Bansal V, Esbona K, Capitini CM, Matkowskyj KA, Deming DA, Politi K, Abrams SI, Harismendy O, Asimakopoulos F. Stromal remodeling regulates dendritic cell abundance and activity in the tumor microenvironment. Cell Rep. 2022 Aug 16;40(7):111201. doi: 10.1016/j.celrep.2022.111201. PMID: 35977482
  6. Scribano CM, Wan J, Esbona K, Tucker JB, Lasek A, Zhou AS, Zasadil LM, Molini R, Fitzgerald J, Lager AM, Laffin JJ, Correia-Staudt K, Wisinski KB, Tevaarwerk AJ, O’Regan R, McGregor SM, Fowler AM, Chappell RJ, Bugni TS, Burkard ME, Weaver BA. Chromosomal instability sensitizes patient breast tumors to multipolar divisions induced by paclitaxel. Sci Transl Med. 2021 Sep 8;13(610):eabd4811. doi: 10.1126/scitranslmed.abd4811. Epub 2021 Sep 8. PMID: 34516829
  7. Magee K, Marsh IR, Turek MM, Grudzinski J, Aluicio-Sarduy E, Engle JW, Kurzman ID, Zuleger CL, Oseid EA, Jaskowiak C, Albertini MR, Esbona K, Bednarz B, Sondel PM, Weichert JP, Morris ZS, Hernandez R, Vail DM. Safety and feasibility of an in situ vaccination and immunomodulatory targeted radionuclide combination immuno-radiotherapy approach in a comparative (companion dog) setting. PLoS One. 2021 Aug 12;16(8):e0255798. doi: 10.1371/journal.pone.0255798. eCollection 2021. PMID: 34383787
  8. Shengqin Su, Gagan Chhabra, Mary A. Ndiaye, Chandra K. Singh, Ting Ye, Wei Huang, Colin N. Dewey, Vijayasaradhi Setaluri and Nihal Ahmad. PLK1 and NOTCH Positively Correlate in Melanoma and Their Combined Inhibition Results in Synergistic Modulations of Key Melanoma Pathways. Mol Cancer Ther Jan 2021;20:161–72. DOI: 10.1158/1535-7163.MCT-20-0654
  9. Huang W, Nebiolo C, Esbona K, Hu R, Lloyd R.Ann Diagn Pathol. 2020 Oct 30:151656. doi:
    1016/j.anndiagpath.2020.151656. Online ahead of print.PMID: 33132037
  10. Narayanan D, Mandal R, Hardin H, Chanana V, Schwalbe M, Rosenbaum J, Buehler D, Lloyd RV. Long Non-coding RNAs in Pulmonary Neuroendocrine Neoplasms. Endocr Pathol. 2020 May. doi: 10.1007/s12022-020-09626-1. PMID: 32388776
  11. Fowler AM, Salem K, DeGrave M, et al. Progesterone Receptor Gene Variants in Metastatic Estrogen Receptor Positive Breast Cancer. Hormones & Cancer. 2020 Apr;11(2):63-75. DOI: 10.1007/s12672-020-00377-3.
  12. Wiesner DL, Merkhofer RM, Ober C, Kujoth GC, Niu M, Keller NP, Gern JE, Brockman-Schneider RA, Evans MD, Jackson DJ, Warner T, Jarjour NN, Esnault SJ, Feldman MB, Freeman M, Mou H, Vyas JM, Klein BS. Club Cell TRPV4 Serves as a Damage Sensor Driving Lung Allergic Inflammation. Cell Host Microbe. 2020 Apr 8;27(4):614-628.e6. doi: 10.1016/j.chom.2020.02.006
  13. Singh A, Denu RA, Wolfe SK, Sperger JM, Schehr J, Witkowsky T, Esbona K, Chappell RJ, Weaver BA, Burkard ME, Lang JM. Centrosome amplification is a frequent event in circulating tumor cells from subjects with metastatic breast cancer. Mol Oncol. 2020 Apr 7. doi: 10.1002/1878-0261.12687.
  14. Oikawa K, Ver Hoeve JN, Teixeira LBC, Snyder KC, Kiland JA, Ellinwood NM, McLellan GJ.Sub-region-Specific Optic Nerve Head Glial Activation in Glaucoma. Mol Neurobiol. 2020 Apr 7. doi: 10.1007/s12035-020-01910-9
  15. Qazi MS, McGregor SM. Combined use of SOX10 and GATA3 in mammary carcinoma. Pathol Res Pract. 2020 Feb;216(2):152801. doi: 10.1016/j.prp.2019.152801.
  16. Denu RA, Kaur G, Sass MM, Lakkaraju A, Burkard ME. Centrosome Amplification in Cancer Disrupts Autophagy and Sensitizes to Autophagy Inhibition. Mol Cancer Res. 2020 Jan;18(1):33-45. doi: 10.1158/1541-7786.MCR-19-0509.
  17. Bowen RC, Lawson BM, Jody NM, Potter HD, Lucarelli MJ. The Programmed Death Pathway in Ocular Adnexal Sebaceous Carcinoma. Ophthalmic Plast Reconstr Surg. 2020 Jan/Feb;36(1):74-79. doi: 10.1097/IOP.0000000000001472
  18. Wang Y, Hardin H, Chu YH, Esbona K, Zhang R, Lloyd RV. Long Non-coding RNA Expression in Anaplastic Thyroid Carcinomas. Endocr Pathol. 2019 Dec;30(4):262-269. doi: 10.1007/s12022-019-09589-y. PMID: 31468286
  19. Vellky JE, Bauman TM, Ricke EA, Huang W, Ricke WA (2019). Incidence of Androgen Receptor and Androgen Receptor Variant 7 Coexpression in Prostate Cancer. 2019 Dec; 79(16)):1811-1822 [Epub 2019 Sep 10]. PMID: 31503366; DOI: 10.1002/pros.23906.
  20. Sheibani N, Wang S, Darjatmoko SR, Fisk DL, Shahi PK, Pattnaik BR, Sorenson CM, Bhowmick R, Volpert OV, Albert DM, Melgar-Asensio I, Henkin J. Novel anti-angiogenic PEDF-derived small peptides mitigate choroidal neovascularization. Exp Eye Res. 2019 Nov;188:107798. doi: 10.1016/j.exer.2019.107798.
  21. Tunicamycin-induced photoreceptor atrophy precedes degeneration of retinal capillaries with minimal effects on retinal ganglion and pigment epithelium cells. Wang S, Liu Y, Tan JW, Hu T, Zhang HF, Sorenson CM, Smith JA, Sheibani N. Exp Eye Res. 2019 Oct;187:107756. doi: 10.1016/j.exer.2019.107756.
  22. Jamali N, Song YS, Sorenson CM, Sheibani N. 1,25(OH)2D3 regulates the proangiogenic activity of pericyte through VDR-mediated modulation of VEGF production and signaling of VEGF and PDGF receptors. FASEB Bioadv. 2019 Jul;1(7):415-434. doi: 10.1096/fba.2018-00067.
  23. Zaitoun IS, Wintheiser CM, Jamali N, Wang S, Suscha A, Darjatmoko SR, Schleck K, Hanna BA, Lindner V, Sheibani N, Sorenson CM. Bcl-2 Expression in Pericytes and Astrocytes Impacts Vascular Development and Homeostasis. Sci Rep. 2019 Jul 4;9(1):9700. doi: 10.1038/s41598-019-45915-4.
  24. Sehgal PD, Bauman TM, Nicholson TM, Vellky JE, Ricke EA, Tang W, Xu W, Huang W, Ricke WA (2019). Tissue-specific Quantification and Localization of Androgen and Estrogen Receptors in Prostate Cancer. Hum Pathol. 2019 Jul; 89:99-108 [Epub 2019 May 3]. PMID: 31054895; PMC6642018; DOI: 10.1016/j.humpath.2019.04.009.
  25. Vellky JE, Ricke EA, Huang W, Ricke WA (2019). Expression and Localization of DDX3 in Prostate Cancer Progression and Metastasis. Am J Pathol. 2019 Jun; 189(6):1256-1267 [Epub 2019 Mar 27]. PMID: 30926334; PMC6547056; DOI: 10.1016/j.ajpath.2019.02.011.
  26. Falero-Perez J, Sorenson CM, Sheibani N.Cyp1b1-deficient retinal astrocytes are more proliferative and migratory and are protected from oxidative stress and inflammation. Am J Physiol Cell Physiol. 2019 Jun 1;316(6):C767-C781. doi: 10.1152/ajpcell.00021.2019.
  27. Sharick JT, Jeffery JJ, Karim MR, Walsh CM, Esbona K, Cook RS, Skala MC. Cellular Metabolic Heterogeneity In Vivo Is Recapitulated in Tumor Organoids. Neoplasia. 2019 Jun;21(6):615-626. doi: 10.1016/j.neo.2019.04.004.
  28. Liu TT, Thomas S, McLean DT, Roldán-Alzate A, Hernando D, Ricke EA, Ricke WA (2019). Prostate Enlargement and Altered Urinary Function Are Part of the Aging Process. Aging. 2019 May 13; 11(9):2653-2699. PMID: 31085797; PMC6535061; DOI: 10.18632/aging.101938.
  29. Wan J, Block S, Scribano CM, Thiry R, Esbona K, Audhya A, Weaver BA. Mad1 destabilizes p53 by preventing PML from sequestering MDM2. Nat Commun. 2019 Apr 4;10(1):1540. doi: 10.1038/s41467-019-09471-9. PMID: 30948704
  30. Faralli JA, Filla MS, Peters DM. Effect of αvβ3 Integrin Expression and Activity on Intraocular Pressure. Invest Ophthalmol Vis Sci. 2019 Apr 1;60(5):1776-1788. doi: 10.1167/iovs.18-26038. PMID:31022732
  31. Ren J, Zhou T, Pilli VSS, Phan N, Wang Q, Gupta K, Liu Z, Sheibani N, Liu B. Circ Res. Novel Paracrine Functions of Smooth Muscle Cells in Supporting Endothelial Regeneration Following Arterial Injury. 2019 Apr 12;124(8):1253-1265. doi: 10.1161/CIRCRESAHA.118.314567.
  32. Falero-Perez J, Larsen MC, Teixeira LBC, Zhang HF, Lindner V, Sorenson CM, Jefcoate CR, Sheibani N. Targeted deletion of Cyp1b1 in pericytes results in attenuation of retinal neovascularization and trabecular meshwork dysgenesis. Trends Dev Biol. 2019;12:1-12.
  33. Mezu-Ndubuisi OJ, Wang Y, Schoephoerster J, Falero-Perez J, Zaitoun IS, Sheibani N, Gong S. Intravitreal Delivery of VEGF-A165-loaded PLGA Microparticles Reduces Retinal Vaso-Obliteration in an In Vivo Mouse Model of Retinopathy of Prematurity. Curr Eye Res. 2019 Mar;44(3):275-286. doi: 10.1080/02713683.2018.1542736.
  34. Kumar M, Salem K, Michel CJ, Jeffery JJ, Yan Y, Fowler AM. 18F-Fluoroestradiol Positron Emission Tomography Imaging of Activating Estrogen Receptor Alpha Mutations in Breast Cancer. J Nucl Med. 2019 Mar 8. pii: jnumed.118.224667. doi: 10.2967/jnumed.118.224667. PMID:  30850489
  35. Spurgeon ME, Uberoi A, McGregor SM, Wei T, Ward-Shaw E, Lambert PF. A Novel In Vivo Infection Model To Study Papillomavirus-Mediated Disease of the Female Reproductive Tract. MBio. 2019 Mar 5;10(2). pii: e00180-19. doi: 10.1128/mBio.00180-19. PMID: 30837335
  36. Roy M, Buehler DG, Zhang R, Schwalbe ML, Baus RM,  Salamat MS, Lloyd RV, Rosenbaum JN. Expression of Insulinoma-Associated Protein 1 (INSM1) and Orthopedia Homeobox (OTP) in Tumors with Neuroendocrine Differentiation at Rare Sites. Endocr Pathol. 2019 Mar;30(1):35-42. doi: 10.1007/s12022-018-9559-y. PMID: 30523500
  37. Chu YH, Hardin H, Eickhoff, Lloyd RV. In Situ Hybridization Analysis of Long Non-coding RNAs MALAT1 and HOTAIR in Gastroenteropancreatic Neuroendocrine Neoplasms. Endocr Pathol. 2019 Mar;30(1):56-63. doi: 10.1007/s12022-018-9564-1. PMID: 30600442
  38. Vellky JE, Ricke EA, W Huang, Ricke WA. Expression and Localization of DDX3 in Prostate Cancer Progression and Metastasis. Am J Pathol. 2019 Mar 27. pii: S0002-9440(18)30965-9. doi: 10.1016/j.ajpath.2019.02.011. PMID: 30926334
  39. Roy M, Buehler DG, Zhang R, Schwalbe ML, Baus RM, Salamat, MS, Lloyd RV, Rosenbaum JN. Expression of Insulinoma-Associated Protein 1 (INSM1) and Orthopedia Homeobox (OTP) in Tumors with Neuroendocrine Differentiation at Rare Sites. Endocr Pathol. 2019 Mar;30(1):35-42. doi: 10.1007/s12022-018-9559-y. PMID:30523500
  40. Yang RK, Zhao P, Lu C, Luo J, Hu R. Expression pattern of androgen receptor and AR-V7 in androgen deprivation therapy naïve salivary duct carcinomas. Hum Pathol. 2018 Sep 26. pii: S0046-8177(18)30371-X. doi: 10.1016/j.humpath.2018.09.009. PMID: 30267779
  41. Huebner SM1, Helfrich KK2, Saini N2, Blohowiak SE3, Cheng AA1, Kling PJ3, Smith SM1,2. Dietary Iron Fortification Normalizes Fetal Hematology, Hepcidin, and Iron Distribution in a Rat Model of Prenatal Alcohol Exposure. Alcohol Clin Exp Res. 2018 Jun;42(6):1022-1033. doi: 10.1111/acer.13754.
  42. Esbona K, Yi Y, Saha S, Yu M, Van Doorn RR, Conklin MW, Graham DS, Wisinski KB, Ponik SM, Eliceiri KW, Wilke LG, Keely PJ. The Presence of Cyclooxygenase 2, Tumor-Associated Macrophages, and Collagen Alignment as Prognostic Markers for Invasive Breast Carcinoma Patients. Am J Pathol. 2018 Mar;188(3):559-573. doi: 10.1016/j.ajpath.2017.10.025. PMID: 29429545
  43. Connor JP, Esbona K, Matkowskyj KA. AKR1B10 expression by immunohistochemistry in surgical resections and fine needle aspiration cytology material in patients with cystic pancreatic lesions; potential for improved nonoperative diagnosis. Hum Pathol. 2017 Dec; 70:77-83. doi: 10.1016/j.humpath.2017.10.006. Epub 2017 Oct 24. PMID: 29079172
  44. Rush, P. S., Rosenbaum, J. N., Roy, M., Baus, R. M., Bennett, D. D., & Lloyd, R. V. (2017). Insulinoma-associated 1: A novel nuclear marker in Merkel cell carcinoma (cutaneous neuroendocrine carcinoma). Journal of Cutaneous Pathology. doi:10.1111/cup.13079
  45. Mandal, R., Hardin, H., Baus, R., Rehrauer, W., & Lloyd, R. V. (2017). Analysis of miR-96 and miR-133a Expression in Gastrointestinal Neuroendocrine Neoplasms. Endocrine Pathology, 28(4), 345-350. doi:10.1007/s12022-017-9504-5
  46. Covach A, Patel S, Hardin H, Lloyd RV. Phosphorylated Mechanistic Target of Rapamycin (p-mTOR) and Noncoding RNA Expression in Follicular and H?rthle Cell Thyroid Neoplasm. Endocr Pathol. 2017 Jun 28. doi: 10.1007/s12022-017-9490-7. [Epub ahead of print] PubMed PMID: 28660408.
  47. King SN, Woo JH, Tang S, Thibeault SL. Macrophage Response to Allogeneic Adipose Tissue-Derived Stromal Cells in Hyaluronan-Based Hydrogel in a Porcine Vocal Fold Injury Model. Ann Otol Rhinol Laryngol. 2017 Jun;126(6):463-477. doi: 10.1177/0003489417702923. Epub 2017 Apr 6. PubMed PMID: 28385042.
  48. Matson DR, Xu J, Huffman L, Barroilhet L, Accola M, Rehrauer WM, Weisman P. KRAS and GNAS Co-Mutation in Metastatic Low-Grade Appendiceal Mucinous Neoplasm (LAMN) to the Ovaries: A Practical Role for Next-Generation Sequencing. Am J Case Rep. 2017 May 20;18:558-562. PubMed PMID: 28526814; PubMed Central PMCID: PMC5447665.
  49. Imaizumi M, Li-Jessen NY, Sato Y, Yang DT, Thibeault SL. Retention of Human-Induced Pluripotent Stem Cells (hiPS) With Injectable HA Hydrogels for Vocal Fold Engineering. Ann Otol Rhinol Laryngol. 2017 Apr;126(4):304-314. doi: 10.1177/0003489417691296. Epub 2017 Feb 12. PubMed PMID: 28290232.
  50. Shen AL, Moran SM, Glover EA, Teixeira LB, Bradfield CA (2017) Retinal pathology in the PPCD1 mouse. PLoS ONE 12(10): e0185094
  51. Pointer KB, Clark PA, Eliceiri KW, Salamat MS, Robertson GA, Kuo JS. Administration of Non-Torsadogenic human Ether-go-go-Related Gene Inhibitors Is Associated with Better Survival for High hERG-Expressing Glioblastoma Patients. Clin Cancer Res. 2017 Jan 1;23(1):73-80. doi: 10.1158/1078-0432.CCR-15-3169. Epub 2016 Sep 15. PubMed PMID: 27635088.
  52. Pointer KB, Clark PA, Schroeder AB, Salamat MS, Eliceiri KW, Kuo JS. Association of collagen architecture with glioblastoma patient survival. J Neurosurg. 2017 Jun;126(6):1812-1821. doi: 10.3171/2016.6.JNS152797. Epub 2016 Sep 2. PubMed PMID: 27588592; PubMed Central PMCID: PMC5386834.
  53. Somnay YR, Yu XM, Lloyd RV, Leverson G, Aburjania Z, Jang S, Jaskula-Sztul R, Chen H. Notch3 expression correlates with thyroid cancer differentiation, induces apoptosis, and predicts disease prognosis. Cancer. 2017 Mar 1;123(5):769-782. doi: 10.1002/cncr.30403. Epub 2016 Nov 2. PMID:27861750
  54. Pili R, Liu G, Chintala S, Verheul H, Rehman S, Attwood K, Lodge MA, Wahl R, Martin JI, Miles KM, Paesante S, Adelaiye R, Godoy A, King S, Zwiebel J, Carducci MA. Combination of the histone deacetylase inhibitor vorinostat with bevacizumab in patients with clear-cell renal cell carcinoma: a multicentre, single-arm phase I/II clinical trial. Br J Cancer. 2017 Mar 28;116(7):874-883. doi: 10.1038/bjc.2017.33. Epub 2017 Feb 21. PubMed PMID: 28222071; PubMed Central PMCID: PMC5379145.
  55. Wilking-Busch MJ, Ndiaye MA, Huang W, Ahmad N. Expression profile of SIRT2 in human melanoma and implications for sirtuin-based chemotherapy. Cell Cycle. 2017 Mar 19;16(6):574-577. doi: 10.1080/15384101.2017.1288323. Epub 2017 Feb 6. PubMed PMID: 28166441; PubMed Central PMCID: PMC5384585.
  56. Blute ML Jr, Damaschke N, Wagner J, Yang B, Gleave M, Fazli L, Shi F, Abel EJ, Downs TM, Huang W, Jarrard DF. Persistence of senescent prostate cancer cells following prolonged neoadjuvant androgen deprivation therapy. PLoS One. 2017 Feb 24;12(2): e0172048. doi: 10.1371/journal.pone.0172048. eCollection 2017. PMID:28234906
  57. Johnson MD, Stone B, Thibodeau BJ, Baschnagel AM, Galoforo S, Fortier LE, Ketelsen B, Ahmed S, Kelley Z, Hana A, Wilson TG, Robertson JM, Jury RP, Wilson GD. The significance of Trk receptors in pancreatic cancer. Tumour Biol. 2017 Feb;39(2):1010428317692256. doi: 10.1177/1010428317692256. PubMed PMID: 28218045.
  58. Jang S, Yu XM, Montemayor-Garcia C, Ahmed K, Weinlander E, Lloyd RV, Dammalapati A, Marshall D, Prudent JR, Chen H. Dysadherin specific drug conjugates for the treatment of thyroid cancers with aggressive phenotypes. Oncotarget. 2017 Jan 30. doi: 10.18632/oncotarget.14904. PMID:28160550
  59. Barcus CE, O’Leary KA, Brockman JL, Rugowski DE, Liu Y, Garcia N, Yu M, Keely PJ, Eliceiri KW, Schuler LA. Elevated collagen-I augments tumor progressive signals, intravasation and metastasis of prolactin-induced estrogen receptor alpha positive mammary tumor cells. Breast Cancer Res. 2017 Jan 19;19(1):9. doi: 10.1186/s13058-017-0801-1. PubMed PMID: 28103936; PubMed Central PMCID: PMC5244528.
  60. Swick AD, Stein AP, McCulloch TM, Hartig GK, Ong IM, Sampene E, Prabakaran PJ, Liu CZ, Kimple RJ. Defining the boundaries and expanding the utility of head and neck cancer patient derived xenografts. Oral Oncol. 2017 Jan;64:65-72. doi: 10.1016/j.oraloncology.2016.11.017. Epub 2016 Dec 8. PubMed PMID: 28024726; PubMed Central PMCID: PMC5218527.
  61. Esbona K, Inman D, Saha S, Jeffery J, Schedin P, Wilke L, Keely P. COX-2 modulates mammary tumor progression in response to collagen density. Breast Cancer Res. 2016 Mar 22;18(1):35. doi: 10.1186/s13058-016-0695-3.
  62. Gertz, R. J., Nikiforov, Y., Rehrauer, W., Mcdaniel, L., & Lloyd, R. V. (2016). Mutation in BRAF and Other Members of the MAPK Pathway in Papillary Thyroid Carcinoma in the Pediatric Population. Archives of Pathology & Laboratory Medicine, 140(2), 134-139. doi:10.5858/arpa.2014-0612-oa
  63. Xu J, Hardin H, Zhang R, Sundling K, Buehler D, Lloyd RV. Stage-Specific Embryonic Antigen-1 (SSEA-1) Expression in Thyroid Tissues. Endocr Pathol. 2016 Dec;27(4):271-275. PMID:27550342
  64. Drifka CR, Loeffler AG, Mathewson K, Keikhosravi A, Eickhoff JC, Liu Y, Weber SM, Kao WJ, Eliceiri KW Highly aligned stromal collagen is a negative prognostic factor following pancreatic ductal adenocarcinoma resection. Oncotarget. 2016 Nov 15;7(46):76197-76213. doi:10.18632/oncotarget.12772. PMID:27776346
  65. Drifka CR, Loeffler AG, Mathewson K, Mehta G, Keikhosravi A, Liu Y, Lemancik S, Ricke WA, Weber SM, Kao WJ, Eliceiri KW. Comparison of Picrosirius Red Staining With Second Harmonic Generation Imaging for the Quantification of Clinically Relevant Collagen Fiber Features in Histopathology Samples. J Histochem Cytochem. 2016 Sep;64(9):519-29. doi: 10.1369/0022155416659249. Epub 2016 Jul 22. PMID:27449741
  66. Bauman TM, Vezina CM, Ricke EA, Halberg RB, Huang W, Peterson R, Ricke WA. Expression and colocalization of β-catenin and lymphoid enhancing factor-1 in prostate cancer progression. Hum Pathol. 2016 May; 51:124-33. doi: 10.1016/j.humpath.2015.12.024. Epub 2016 Jan 19.
  67. Bauman TM, Ricke EA, Drew SA, Huang W, Ricke WA. Quantitation of Protein Expression and Co-localization Using Multiplexed Immuno-histochemical Staining and Multispectral Imaging. J Vis Exp. 2016 Apr 8;(110). doi: 10.3791/53837.
  68. George J, Nihal M, Singh CK, Zhong W, Liu X, Ahmad N. Pro-Proliferative Function of Mitochondrial Sirtuin Deacetylase SIRT3 in Human Melanoma. J Invest Dermatol. 2016Apr;136(4):809-18. doi: 10.1016/j.jid.2015.12.026.
  69. Denu, R. A., Zasadil, L. M., Kanugh, C., Laffin, J., Weaver, B. A., Burkard, M. E. Centrosome amplification induces high grade features and is prognostic of worse outcomes in breast cancer. BMC Cancer201616:47 DOI: 10.1186/s12885-016-2083-x (2016).
  70. Yu W, Denu RA, Krautkramer KA, Grindle KM, Yang DT, Asimakopoulos F, Hematti P, Denu JM. Loss of SIRT3 Provides Growth Advantage for B Cell Malignancies. J Biol Chem. 2016 Feb 12;291(7):3268-79. doi: 10.1074/jbc.M115.702076. PMID:26631723
  71. Choudhary A, Zachek B, Lera RF, Zasadil LM, Lasek A, Denu RA, Kim H, Kanugh C, Laffin JJ, Harter JM, Wisinski KB, Saha S, Weaver BA, Burkard ME. Identification of Selective Lead Compounds for Treatment of High-Ploidy Breast Cancer. Mol Cancer Ther. 2016;15(1):48-59. Epub 2015/11/21. doi: 10.1158/1535-7163.mct-15-0527. PubMed PMID: 26586723; PMCID: PMC4707107.
  72. Denu RA, Zasadil LM, Kanugh C, Laffin J, Weaver BA, Burkard ME. Centrosome amplification induces high grade features and is prognostic of worse outcomes in breast cancer. BMC Cancer. 2016; 16:47. Epub 2016/02/03. doi: 10.1186/s12885-016-2083-x. PubMed PMID: 26832928; PMCID: PMC4734858.
  73. Francis DM, Huang S, Armstrong EA, Werner LR, Hullett C, Li C, Morris ZS, Swick AD, Kragh M, Lantto J, Kimple RJ, Harari PM. Pan-HER Inhibitor Augments Radiation Response in Human Lung and Head and Neck Cancer Models. Clin Cancer Res. 2016;22(3):633-43. Epub 2015/10/01. doi: 10.1158/1078-0432.ccr-15-1664. PubMed PMID: 26420857.
  74. Gee JR, Saltzstein DR, Messing E, Kim K, Kolesar J, Huang W, Havighurst TC, Harris L, Wollmer BW, Jarrard D, House M, Parnes H, Bailey HH. Phase Ib placebo-controlled, tissue biomarker trial of diindolylmethane (BR-DIMNG) in patients with prostate cancer who are undergoing prostatectomy. Eur J Cancer Prev. 2016;25(4):312-20. Epub 2015/08/28. doi: 10.1097/cej.0000000000000189. PubMed PMID: 26313229.
  75. Iida M, Bahrar H, Brand TM, Pearson HE, Coan JP, Orbuch RA, Flanigan BG, Swick AD, Prabakaran PJ, Lantto J, Horak ID, Kragh M, Salgia R, Kimple RJ, Wheeler DL. Targeting the HER Family with Pan-HER Effectively Overcomes Resistance to Cetuximab. Mol Cancer Ther. 2016;15(9):2175-86. Epub 2016/07/17. doi: 10.1158/1535-7163.mct-16-0012. PubMed PMID: 27422810; PMCID: PMC5010956.
  76. Katsumura KR, Ong IM, DeVilbiss AW, Sanalkumar R, Bresnick EH. GATA Factor-Dependent Positive-Feedback Circuit in Acute Myeloid Leukemia Cells. Cell Rep. 2016;16(9):2428-41. Epub 2016/08/23. doi: 10.1016/j.celrep.2016.07.058. PubMed PMID: 27545880; PMCID: PMC5154384.
  77. Wisinski KB, Tevaarwerk AJ, Burkard ME, Rampurwala M, Eickhoff J, Bell MC, Kolesar JM, Flynn C, Liu G. Phase I Study of an AKT Inhibitor (MK-2206) Combined with Lapatinib in Adult Solid Tumors Followed by Dose Expansion in Advanced HER2+ Breast Cancer. Clin Cancer Res. 2016;22(11):2659-67. Epub 2016/03/31. doi: 10.1158/1078-0432.ccr-15-2365. PubMed PMID: 27026198; PMCID: PMC4891227.
  78. Zumwalde NA, Haag JD, Sharma D, Mirrielees JA, Wilke LG, Gould MN, Gumperz JE. Analysis of Immune Cells from Human Mammary Ductal Epithelial Organoids Reveals Vdelta2+ T Cells That Efficiently Target Breast Carcinoma Cells in the Presence of Bisphosphonate. Cancer Prev Res (Phila). 2016;9(4):305-16. Epub 2016/01/27. doi: 10.1158/1940-6207.capr-15-0370-t. PubMed PMID: 26811335; PMCID: PMC4818696.
  79. Cholewa BD, Ndiaye MA, Huang W, Liu X, Ahmad N. Small molecule inhibition of polo-like kinase 1 by volasertib (BI 6727) causes significant melanoma growth delay and regression in vivo. Cancer Lett. 2017 Jan 28;385:179-187. doi: 10.1016/j.canlet.2016.10.025. Epub 2016 Oct 25. PubMed PMID: 27793694; PubMed Central PMCID: PMC5171235.
  80. Kuo PY, Leshchenko VV, Fazzari MJ, Perumal D, Gellen T, He T, Iqbal J, Baumgartner-Wennerholm S, Nygren L, Zhang F, Zhang W, Suh KS, Goy A, Yang DT, Chan WC, Kahl BS, Verma AK, Gascoyne RD, Kimby E, Sander B, Ye BH, Melnick AM, Parekh S. High-resolution chromatin immunoprecipitation (ChIP) sequencing reveals novel binding targets and prognostic role for SOX11 in mantle cell lymphoma. Oncogene. 2015 Mar 5;34(10):1231-40. PMCID: PMC4511176
  81. Drifka CR, Tod J, Loeffler AG, Liu Y, Thomas GJ, Eliceiri KW, Kao WJ. Periductal stromal collagen topology of pancreatic ductal adenocarcinoma differs from that of normal and chronic pancreatitis. Mod Pathol. 2015 Nov;28(11):1470-80. doi: 10.1038/modpathol.2015.97. Epub 2015 Sep 4.
  82. Bauman TM, Becka AJ, Sehgal PD, Huang W, Ricke WA. SIGIRR/TIR8, an important regulator of TLR4 and IL-1R-mediated NF-κB activation, predicts biochemical recurrence after prostatectomy in low-grade prostate carcinomas. Hum Pathol. 2015 Nov;46(11):1744-51. doi: 10.1016/j.humpath.2015.07.015. Epub 2015 Jul 29.
  83. Shanle EK, Onitilo AA, Huang W, Kim K, Zang C, Engel JM, Xu W, Wisinski KB. Prognostic significance of full-length estrogen receptor beta expression in stage I-III triple negative breast cancer. Am J Transl Res. 2015 Jul 15;7(7):1246-59. eCollection 2015.
  84. Bauman TM, Ewald JA, Huang W, Ricke WA. CD147 expression predicts biochemical recurrence after prostatectomy independent of histologic and pathologic features. BMC Cancer. 2015 Jul 25; 15:549. doi: 10.1186/s12885-015-1559-4.
  85. Fakhraldeen SA, Clark RJ, Roopra A, Chin EN, Huang W, Castorino J, Wisinski KB, Kim T, Spiegelman VS, Alexander CM. Two Isoforms of the RNA Binding Protein, Coding Region Determinant-binding Protein (CRD-BP/IGF2BP1), Are Expressed in Breast Epithelium and Support Clonogenic Growth of Breast Tumor Cells. J Biol Chem. 2015 May 22;290(21):13386-400. doi: 10.1074/jbc.M115.655175. Epub 2015 Apr 10.
  86. Wagner J, Damaschke N, Yang B, Truong M, Guenther C, McCormick J, Huang W, Jarrard D. Overexpression of the novel senescence marker β-galactosidase (GLB1) in prostate cancer predicts reduced PSA recurrence. PLoS One. 2015 Apr 15;10(4): e0124366. doi: 10.1371/journal.pone.0124366. eCollection 2015.
  87. Artz NS, Haufe WM, Hooker CA, Hamilton G, Wolfson T, Campos GM, Gamst AC, Schwimmer JB, Sirlin CB, Reeder SB. Reproducibility of MR-based liver fat quantification across field strength: Same-day comparison between 1.5T and 3T in obese subjects. J Magn Reson Imaging. 2015;42(3):811-7. Epub 2015/01/27. doi: 10.1002/jmri.24842. PubMed PMID: 25620624; PMCID: PMC4803480
  88. Huang W, Eickhoff JC, Mehraein-Ghomi F, Church DR, Wilding G, Basu HS. Expression of spermidine/spermine N (1) -acetyl transferase (SSAT) in human prostate tissues is related to prostate cancer progression and metastasis. Prostate. 2015;75(11):1150-9. Epub 2015/04/22. doi: 10.1002/pros.22996. PubMed PMID: 25893668; PMCID: PMC4475436.
  89. Jaskula-Sztul R, Eide J, Tesfazghi S, Dammalapati A, Harrison AD, Yu XM, Scheinebeck C, Winston-McPherson G, Kupcho KR, Robers MB, Hundal AK, Tang W, Chen H. Tumor-suppressor role of Notch3 in medullary thyroid carcinoma revealed by genetic and pharmacological induction. Mol Cancer Ther. 2015;14(2):499-512. Epub 2014/12/17. doi: 10.1158/1535-7163.mct-14-0073. PubMed PMID: 25512616; PMCID: PMC4326595.
  90. Shlensky D, Mirrielees JA, Zhao Z, Wang L, Mahajan A, Yu M, Sherer NM, Wilke LG, Xu W. Differential CARM1 Isoform Expression in Subcellular Compartments and among Malignant and Benign Breast Tumors. PLoS One. 2015;10(6): e0128143. Epub 2015/06/02. doi: 10.1371/journal.pone.0128143. PubMed PMID: 26030442; PMCID: PMC4451767.
  91. Zeng H, Xu W. Ctr9, a key subunit of PAFc, affects global estrogen signaling and drives ERalpha-positive breast tumorigenesis. Genes Dev. 2015;29(20):2153-67. Epub 2015/10/24. doi: 10.1101/gad.268722.115. PubMed PMID: 26494790; PMCID: PMC4617979.
  92. Benjamin D.S. Clarkson, Changying Ling, Yejie Shi, Melissa G. Harris, Aditya Rayasam, Dandan Sun, M. Shahriar Salamat, Vijay Kuchroo, John D. Lambris, Matyas Sandor, Zsuzsanna Fabry, T cell–derived interleukin (IL)-21 promotes brain injury following stroke in mice. Journal of Experimental Medicine. Mar 2014, jem.20131377.
  93. Rasmussen CA, Schlosser SJ, Allen-Hoffmann BL (2014) Morphogenesis of Biologically Active Interfollicular Epidermis from Human Embryonic Stem Cell-derived Keratinocytes. J Stem Cell Res Ther 4:163.
  94. Hope C, Ollar SJ, Heninger E, Hebron E, Jensen JL, Kim J, Maroulakou I, Miyamoto S, Leith C, Yang DT, Callander N, Hematti P, Chesi M, Bergsagel PL, Asimakopoulos F. TPL2 kinase regulates the inflammatory milieu of the myeloma niche. Blood. 2014 May 22;123(21):3305-15. PMCID: PMC4046426
  95. Damaschke NA, Yang B, Blute ML Jr, Lin CP, Huang W, Jarrard DF. Frequent disruption of chromodomain helicase DNA-binding protein 8 (CHD8) and functionally associated chromatin regulators in prostate cancer. Neoplasia. 2014 Dec;16(12):1018-27. doi: 10.1016/j.neo.2014.10.003.
  96. Bauman TM, Vezina CM, Huang W, Marker PC, Peterson RE, Ricke WA. Beta-catenin is elevated in human benign prostatic hyperplasia specimens compared to histologically normal prostate tissue. Am J Clin Exp Urol. 2014 Dec 25;2(4):313-22. eCollection 2014.
  97. Bauman TM, Nicholson TM, Abler LL, Eliceiri KW, Huang W, Vezina CM, Ricke WA. Characterization of fibrillar collagens and extracellular matrix of glandular benign prostatic hyperplasia nodules. PLoS One. 2014 Oct 2;9(10): e109102. doi: 10.1371/journal.pone.0109102. eCollection 2014.
  98. Bauman TM, Sehgal PD, Johnson KA, Pier T, Bruskewitz RC, Ricke WA, Huang W. Finasteride treatment alters tissue specific androgen receptor expression in prostate tissues.Prostate. 2014 Jun;74(9):923-32. doi: 10.1002/pros.22810. Epub 2014 Apr 30.
  99. Abel EJ, Bauman TM, Weiker M, Shi F, Downs TM, Jarrard DF, Huang W. Analysis and validation of tissue biomarkers for renal cell carcinoma using automated high-throughput evaluation of protein expression. Hum Pathol. 2014 May;45(5):1092-9. doi: 10.1016/j.humpath.2014.01.008. Epub 2014 Jan 28.
  100. Su G, Meyer K, Nandini CD, Qiao D, Salamat S, Friedl A. Glypican-1 is frequently overexpressed in human gliomas and enhances FGF-2 signaling in glioma cells. Am J Pathol. 2006 Jun;168(6):2014-26.
  101. Brand TM, Iida M, Dunn EF, Luthar N, Kostopoulos KT, Corrigan KL, Wleklinski MJ, Yang D, Wisinski KB, Salgia R, Wheeler DL. Nuclear epidermal growth factor receptor is a functional molecular target in triple-negative breast cancer. Mol Cancer Ther. 2014;13(5):1356-68. Epub 2014/03/19. doi: 10.1158/1535-7163.mct-13-1021. PubMed PMID: 24634415; PMCID: PMC4013210.
  102. Wang L, Zhao Z, Meyer MB, Saha S, Yu M, Guo A, Wisinski KB, Huang W, Cai W, Pike JW, Yuan M, Ahlquist P, Xu W. CARM1 methylates chromatin remodeling factor BAF155 to enhance tumor progression and metastasis. Cancer Cell. 2014;25(1):21-36. Epub 2014/01/18. doi: 10.1016/j.ccr.2013.12.007. PubMed PMID: 24434208; PMCID: PMC4004525.
  103. Katzenberger R. J., Loewen C. A., Wassarman D. R., Petersen A. J., Ganetzky B., et al., 2013 A Drosophila model of closed head traumatic brain injury. Proc. Natl. Acad. Sci. USA 110: E4152–E4159.
  104. Oberley MJ, Rajguru SA, Zhang C, Kim K, Shaw GR, Grindle KM, Kahl BS, Kanugh C, Laffin J, Yang DT. Immunohistochemical evaluation of MYC expression in mantle cell lymphoma. Histopathology. 2013 Oct;63(4):499-508. doi: 10.1111/his.12207. Epub 2013 Aug 8.
  105. Slezak J, Truong M, Huang W, Jarrard D. HP1γ expression is elevated in prostate cancer and is superior to Gleason score as a predictor of biochemical recurrence after radical prostatectomy. BMC Cancer. 2013 Mar 23; 13:148. doi: 10.1186/1471-2407-13-148.
  106. Nicholson TM, Sehgal PD, Drew SA, Huang W, Ricke WA. Sex steroid receptor expression and localization in benign prostatic hyperplasia varies with tissue compartment. Differentiation. 2013 Apr-Jun;85(4-5):140-9. doi: 10.1016/j.diff.2013.02.006. Epub 2013 Jun 20.
  107. Desotelle J, Truong M, Ewald J, Weeratunga P, Yang B, Huang W, Jarrard D. CpG island hypermethylation frequently silences FILIP1L isoform 2 expression in prostate cancer. J Urol. 2013 Jan;189(1):329-35. doi: 10.1016/j.juro.2012.08.188. Epub 2012 Nov 20.
  108. Buehler D, Hardin H, Shan W, Montemayor-Garcia C, Rush PS, Asioli S, Chen H, Lloyd RV. Expression of epithelial-mesenchymal transition regulators SNAI2 and TWIST1 in thyroid carcinomas. Mod Pathol. 2013 Jan;26(1):54-61. doi: 10.1038/modpathol.2012.137. Epub 2012 Aug 17.
  109. Yang B, Bhusari S, Kueck J, Weeratunga P, Wagner J, Leverson G, Huang W, Jarrard DF. Methylation profiling defines an extensive field defect in histologically normal prostate tissues associated with prostate cancer. Neoplasia. 2013 Apr;15(4):399-408.
  110. Huang W, Hennrick K, Drew S. A colorful future of quantitative pathology: validation of Vectra technology using chromogenic multiplexed immunohistochemistry and prostate tissue microarrays. Hum Pathol. 2013 Jan;44(1):29-38. doi: 10.1016/j.humpath.2012.05.009. Epub 2012 Aug 31.
  111. Drifka CR, Eliceiri KW, Weber SM, Kao WJ. A bioengineered heterotypic stroma-cancer microenvironment model to study pancreatic ductal adenocarcinoma. Lab Chip. 2013;13(19):3965-75. Epub 2013/08/21. doi: 10.1039/c3lc50487e. PubMed PMID: 23959166; PMCID: PMC3834588.
  112. Yang N, Mosher R, Seo S, Beebe D, Friedl A. Syndecan-1 in breast cancer stroma fibroblasts regulates extracellular matrix fiber organization and carcinoma cell motility. Am J Pathol. 2011 Jan;178(1):325-35. doi: 10.1016/j.ajpath.2010.11.039. Epub 2010 Dec 23.
  113. Conklin MW, Eickhoff JC, Riching KM, Pehlke CA, Eliceiri KW, Provenzano PP, Friedl A, Keely PJ. Aligned collagen is a prognostic signature for survival in human breast carcinoma.Am J Pathol. 2011 Mar;178(3):1221-32. doi: 10.1016/j.ajpath.2010.11.076.
  114. Yang DT, Quann PJ, Petrich AM, Leith CP, Young KH, Kahl BS. Use of tissue microarray and automated quantitative analysis for screening and validation of potential biomarkers in mantle cell lymphoma. Appl Immunohistochem Mol Morphol. 2011 Jan;19(1):62-9. PMCID: PMC3040491
  115. Wagoner MP, Gunsalus KT, Schoenike B, Richardson AL, Friedl A, Roopra A. The transcription factor REST is lost in aggressive breast cancer. PLoS Genet. 2010 Jun 10;6(6):e1000979. doi: 10.1371/journal.pgen.1000979.
  116. Maddodi N, Huang W, Havighurst T, Kim K, Longley BJ, Setaluri V. Induction of autophagy and inhibition of melanoma growth in vitro and in vivo by hyperactivation of oncogenic BRAF. J Invest Dermatol. 2010 Jun;130(6):1657-67. doi: 10.1038/jid.2010.26. Epub 2010 Feb 25.
  117. Leshchenko VV, Kuo PY, Shaknovich R, Yang DT, Gellen T, Petrich A, Yu Y, Remache Y, Weniger MA, Rafiq S, Suh KS, Goy A, Wilson W, Verma A, Braunschweig I, Muthusamy N, Kahl BS, Byrd JC, Wiestner A, Melnick A, Parekh S. Genomewide DNA methylation analysis reveals novel targets for drug development in mantle cell lymphoma. Blood. 2010 Aug 19;116(7):1025-34. PMCID: PMC2938124
  118. Thomas-Virnig, C.L., J.M. Centanni, C.E. Johnston, L.K. He, S.J. Schlosser, …, B.L. Allen-Hoffmann. Inhibition of multidrug-resistant acinetobacter baumannii by nonviral expression of hCAP-18 in a bioengineered human skin tissue. Mol. Ther., 17 (2009), pp. 562-569
  119. Rahrmann EP, Collier LS, Knutson TP, Doyal ME, Kuslak SL, Green LE, Malinowski RL, Roethe L, Akagi K, Waknitz M, Huang W, Largaespada DA, Marker PC. Identification of PDE4D as a proliferation promoting factor in prostate cancer using a Sleeping Beauty transposon-based somatic mutagenesis screen. Cancer Res. 2009 May 15;69(10):4388-97. doi: 10.1158/0008-5472.CAN-08-3901. Epub 2009 Apr 28.
  120. Huang W, Kanehira K, Drew S, Pier T. Oncocytoma can be differentiated from its renal cell carcinoma mimics by a panel of markers: an automated tissue microarray study. Appl Immunohistochem Mol Morphol. 2009 Jan;17(1):12-7. PMID: 18769342
  121. Sadow PM, Rumilla KM, Erickson LA, Lloyd RV. Stathmin expression in pheochromocytomas, paragangliomas, and in other endocrine tumors. Endocr Pathol. 2008 Summer;19(2):97-103. doi: 10.1007/s12022-008-9028-0.
  122. Rumilla KM, Erickson LA, Erickson AK, Lloyd RV. Galectin-4 expression in carcinoid tumors. Endocr Pathol. 2006 Fall;17(3):243-9.
  123. Ruebel KH, Leontovich AA, Jin L, Stilling GA, Zhang H, Qian X, Nakamura N, Scheithauer BW, Kovacs K, Lloyd RV. Patterns of gene expression in pituitary carcinomas andadenomas analyzed by high-density oligonucleotide arrays, reverse transcriptase-quantitative PCR, and protein expression. Endocrine. 2006 Jun;29(3):435-44.
  124. Baba F, Swartz K, van Buren R, Eickhoff J, Zhang Y, Wolberg W, Friedl A. Syndecan-1 and syndecan-4 are overexpressed in an estrogen receptor-negative, highly proliferative breast carcinoma subtype. Breast Cancer Res Treat. 2006 Jul;98(1):91-8. Epub 2006 Apr 25.
  125. Maeda T, Desouky J, Friedl A. Syndecan-1 expression by stromal fibroblasts promotes breast carcinoma growth in vivo and stimulates tumor angiogenesis. Oncogene. 2006 Mar 2;25(9):1408-12.
  126. C. Baiu, B. Barger, M. Sandor, Z. Fabry, M.N. Hart. Autoantibodies to vascular smooth muscle are pathogenic for vasculitis. Am J Pathol, 166 (2005), pp. 1851-1860.
  127. Barry M. Steiglitz, Douglas R. Keene and Daniel S. Greenspan. PCOLCE2 Encodes a Functional Procollagen C-Proteinase Enhancer (PCPE2) That Is a Collagen-binding Protein Differing in Distribution of Expression and Post-translational Modification from the Previously Described PCPE1. J. Biol. Chem. 2002, 277:49820-49830.
  128. Jarrard DF, Modder J, Fadden P, Fu V, Sebree L, Heisey D, Schwarze SR, Friedl A. Alterations in the p16/pRb cell cycle checkpoint occur commonly in primary and metastatic human prostate cancer. Cancer Lett. 2002 Nov 28;185(2):191-9.
  129. Hogan LH, Macvilay K, Barger B, Co D, Malkovska I, Fennelly G, Sandor M. 2001. Mycobacterium bovis strain bacillus Calmette-Guerin-induced liver granulomas contain a diverse TCR repertoire, but a monoclonal T cell population is sufficient for protective granuloma formation. J Immunol 166:6367–6375.